5TNJ Hydrolase date Oct 14, 2016
title Crystal Structure Of The E153q Mutant Of The Cftr Inhibitory Cif Containing The Adducted 4-Vinyl-1-Cyclohexene 1,2-Epoxi Hydrolysis Intermediate
authors K.L.Hvorecny, D.R.Madden
compound source
Molecule: Cftr Inhibitory Factor
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Ucbpp-P
Organism_taxid: 208963
Strain: Ucbpp-Pa14
Gene: Pa14_26090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
symmetry Space Group: C 1 2 1
R_factor 0.145 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.351 83.436 89.377 90.00 100.45 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 8MD, AVH, BVH, DVH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceActive-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase., Hvorecny KL, Bahl CD, Kitamura S, Lee KSS, Hammock BD, Morisseau C, Madden DR, Structure. 2017 May 2;25(5):697-707.e4. doi: 10.1016/j.str.2017.03.002. Epub 2017, Apr 6. PMID:28392259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (407 Kb) [Save to disk]
  • Biological Unit Coordinates (5tnj.pdb1.gz) 203 Kb
  • Biological Unit Coordinates (5tnj.pdb2.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5TNJ
  • CSU: Contacts of Structural Units for 5TNJ
  • Structure Factors (1280 Kb)
  • Retrieve 5TNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TNJ from S2C, [Save to disk]
  • View 5TNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TNJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tnj_D] [5tnj_A] [5tnj_C] [5tnj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TNJ
  • Community annotation for 5TNJ at PDBWiki (http://pdbwiki.org)

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