5TO6 Cell Cycle date Oct 16, 2016
title Structure Of The Tpr Oligomerization Domain
authors K.Pal, A.Bandyopadhyay, Q.Xu, X.E.Zhou, K.Melcher, H.E.Xu
compound source
Molecule: Nucleoprotein Tpr
Chain: A, B, C, D
Fragment: Unp Residues 2-142
Synonym: Megator,Npc-Associated Intranuclear Protein,Transl Promoter Region Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tpr
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.237 R_Free 0.288
length a length b length c angle alpha angle beta angle gamma
76.790 34.860 113.470 90.00 91.85 90.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceStructural Basis of TPR-Mediated Oligomerization and Activation of Oncogenic Fusion Kinases., Pal K, Bandyopadhyay A, Zhou XE, Xu Q, Marciano DP, Brunzelle JS, Yerrum S, Griffin PR, Vande Woude G, Melcher K, Xu HE, Structure. 2017 Jun 6;25(6):867-877.e3. doi: 10.1016/j.str.2017.04.015. Epub 2017, May 18. PMID:28528776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5to6.pdb1.gz) 194 Kb
  • CSU: Contacts of Structural Units for 5TO6
  • Structure Factors (198 Kb)
  • Retrieve 5TO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TO6 from S2C, [Save to disk]
  • View 5TO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TO6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5to6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5to6_D] [5to6_A] [5to6_B] [5to6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TO6
  • Community annotation for 5TO6 at PDBWiki (http://pdbwiki.org)

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