5TO7 Cell Cycle date Oct 16, 2016
title Structure Of The Tpr Oligomerization Domain
authors K.Pal, Q.Xu, X.E.Zhou, K.Melcher, H.E.Xu
compound source
Molecule: Nucleoprotein Tpr
Chain: A, B, C, D
Fragment: Unp Residues 2-142
Synonym: Megator,Npc-Associated Intranuclear Protein,Transl Promoter Region Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tpr
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.490 51.190 113.800 90.00 129.32 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceStructural Basis of TPR-Mediated Oligomerization and Activation of Oncogenic Fusion Kinases., Pal K, Bandyopadhyay A, Zhou XE, Xu Q, Marciano DP, Brunzelle JS, Yerrum S, Griffin PR, Vande Woude G, Melcher K, Xu HE, Structure. 2017 Jun 6;25(6):867-877.e3. doi: 10.1016/j.str.2017.04.015. Epub 2017, May 18. PMID:28528776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5to7.pdb1.gz) 96 Kb
  • CSU: Contacts of Structural Units for 5TO7
  • Structure Factors (777 Kb)
  • Retrieve 5TO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TO7 from S2C, [Save to disk]
  • View 5TO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TO7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5to7_B] [5to7_D] [5to7_A] [5to7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TO7
  • Community annotation for 5TO7 at PDBWiki (http://pdbwiki.org)

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