5TOD Lipid Transport date Oct 17, 2016
title Transmembrane Protein 24 Smp Domain
authors J.A.Lees, K.M.Reinisch
compound source
Molecule: Transmembrane Protein 24
Chain: F, A, B, C, D, E
Synonym: C2 Domain-Containing Protein 2-Like
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C2cd2l, Kiaa0285, Tmem24, Dlnb23
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.395 117.098 148.133 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.96 Å
ligand MSE enzyme
Primary referenceLipid transport by TMEM24 at ER-plasma membrane contacts regulates pulsatile insulin secretion., Lees JA, Messa M, Sun EW, Wheeler H, Torta F, Wenk MR, De Camilli P, Reinisch KM, Science. 2017 Feb 17;355(6326). pii: eaah6171. doi: 10.1126/science.aah6171. PMID:28209843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (441 Kb) [Save to disk]
  • Biological Unit Coordinates (5tod.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5tod.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (5tod.pdb3.gz) 77 Kb
  • Biological Unit Coordinates (5tod.pdb4.gz) 71 Kb
  • Biological Unit Coordinates (5tod.pdb5.gz) 78 Kb
  • Biological Unit Coordinates (5tod.pdb6.gz) 73 Kb
  • Biological Unit Coordinates (5tod.pdb7.gz) 427 Kb
  • LPC: Ligand-Protein Contacts for 5TOD
  • CSU: Contacts of Structural Units for 5TOD
  • Structure Factors (640 Kb)
  • Retrieve 5TOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TOD from S2C, [Save to disk]
  • Re-refined 5tod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TOD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tod_C] [5tod_D] [5tod_A] [5tod] [5tod_F] [5tod_E] [5tod_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TOD
  • Community annotation for 5TOD at PDBWiki (http://pdbwiki.org)

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