5TPT Protein Fibril date Oct 21, 2016
title The Crystal Structure Of Amyloid Precursor-Like Protein 2 (A Domain
authors L.C.Roisman, R.Cappai
compound source
Molecule: Amyloid-Like Protein 2
Chain: A, B
Fragment: Unp Residues 373-569
Synonym: Aplp-2,Apph,Amyloid Protein Homolog,Cdei Box-Bindi Protein,Cdebp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aplp2, Appl2
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.749 150.118 39.107 90.00 109.69 90.00
method X-Ray Diffractionresolution 2.42 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of amyloid precursor-like protein 2 E2 domain completes the amyloid precursor protein family., Roisman LC, Han S, Chuei MJ, Connor AR, Cappai R, FASEB J. 2019 Apr;33(4):5076-5081. doi: 10.1096/fj.201802315R. Epub 2019 Jan 4. PMID:30608876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (5tpt.pdb1.gz) 66 Kb
  • CSU: Contacts of Structural Units for 5TPT
  • Structure Factors (459 Kb)
  • Retrieve 5TPT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TPT from S2C, [Save to disk]
  • View 5TPT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TPT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tpt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tpt_B] [5tpt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TPT
  • Community annotation for 5TPT at PDBWiki (http://pdbwiki.org)

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