5TR2 Isomerase date Oct 25, 2016
title Crystal Structure Of The D263g Missense Variant Of Human Pgm
authors L.J.Beamer, K.M.Stiers
compound source
Molecule: Phosphoglucomutase-1
Chain: A, B
Synonym: Pgm 1,Glucose Phosphomutase 1
Ec: 5.4.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pgm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.220 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.124 172.124 99.005 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, GOL, SEP, SO4 enzyme Isomerase E.C.5.4.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAsp263 missense variants perturb the active site of human phosphoglucomutase 1., Stiers KM, Graham AC, Kain BN, Beamer LJ, FEBS J. 2017 Jan 24. doi: 10.1111/febs.14025. PMID:28117557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (5tr2.pdb1.gz) 175 Kb
  • Biological Unit Coordinates (5tr2.pdb2.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 5TR2
  • CSU: Contacts of Structural Units for 5TR2
  • Structure Factors (2975 Kb)
  • Retrieve 5TR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TR2 from S2C, [Save to disk]
  • Re-refined 5tr2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TR2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tr2] [5tr2_A] [5tr2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TR2
  • Community annotation for 5TR2 at PDBWiki (http://pdbwiki.org)

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