OCA Atlas for 5TRE

5TRE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
C, H, M, Q, T, E, B, J, G, K, D, A, O, S, I, R, U, V, N, F, L, X, W, P
a, i, c, b, o, t, k, l, p, m, d, n, v, f, w, h, j, e, x, u, r, g, q, s

Primary reference

Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe-S cluster assembly centers., Galeano BK, Ranatunga W, Gakh O, Smith DY, Thompson JR, Isaya G, Metallomics. 2017 Jun 21;9(6):773-801. doi: 10.1039/c7mt00089h. PMID:28548666

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (816 Kb) [Save to disk]

Biological Unit Coordinates (5tre.pdb1.gz) 811 Kb

CSU: Contacts of Structural Units for 5TRE

Retrieve 5TRE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5TRE from S2C, [Save to disk]

View 5TRE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tre_A] [5tre_l] [5tre_B] [5tre_C] [5tre_m] [5tre_D] [5tre_E] [5tre_F] [5tre_n] [5tre_G] [5tre_H] [5tre_I] [5tre_J] [5tre_K] [5tre_L] [5tre_o] [5tre_M] [5tre_p] [5tre_N] [5tre_O] [5tre_P] [5tre_Q] [5tre_R] [5tre_S] [5tre_q] [5tre_T] [5tre_U] [5tre_V] [5tre_W] [5tre_X] [5tre_a] [5tre_b] [5tre_c] [5tre_r] [5tre_d] [5tre_e] [5tre_f] [5tre_g] [5tre_h] [5tre_i] [5tre_s] [5tre_j] [5tre_k] [5tre_t] [5tre_u] [5tre_v] [5tre_w] [5tre_x]

SWISS-PROT database:

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