OCA Atlas for 5TRG

5TRG

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

7HJ

enzyme

Gene

MRA ; MRA

Gene
Ontology

Chain	Function	Process	Component
B, P, C, S, T, Q, U, R, F, A, D, E, O, G
b, Y, H, J, V, I, N, K, L, Z, W, a, X, M

Primary reference

Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome., Hsu HC, Singh PK, Fan H, Wang R, Sukenick G, Nathan C, Lin G, Li H, Biochemistry. 2017 Jan 10;56(1):324-333. doi: 10.1021/acs.biochem.6b01107. Epub, 2016 Dec 27. PMID:27976853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (946 Kb) [Save to disk]

Biological Unit Coordinates (5trg.pdb1.gz) 933 Kb

LPC: Ligand-Protein Contacts for 5TRG

CSU: Contacts of Structural Units for 5TRG

Structure Factors (2757 Kb)

Retrieve 5TRG in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5TRG from S2C, [Save to disk]

Re-refined 5trg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TRG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5trg] [5trg_I] [5trg_A] [5trg_B] [5trg_C] [5trg_D] [5trg_E] [5trg_F] [5trg_G] [5trg_H] [5trg_J] [5trg_K] [5trg_L] [5trg_M] [5trg_N] [5trg_O] [5trg_P] [5trg_Q] [5trg_R] [5trg_S] [5trg_T] [5trg_U] [5trg_V] [5trg_W] [5trg_X] [5trg_Y] [5trg_Z] [5trg_a] [5trg_b]

SWISS-PROT database:

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