OCA Atlas for 5TRR

5TRR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

7HY

enzyme

Gene

MRA ; MRA

Gene
Ontology

Chain	Function	Process	Component
T, Q, D, S, U, B, C, A, R, P, G, F, O, E
Y, Z, N, I, M, W, a, H, V, L, X, K, J, b

Primary reference

Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome., Hsu HC, Singh PK, Fan H, Wang R, Sukenick G, Nathan C, Lin G, Li H, Biochemistry. 2017 Jan 10;56(1):324-333. doi: 10.1021/acs.biochem.6b01107. Epub, 2016 Dec 27. PMID:27976853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (936 Kb) [Save to disk]

Biological Unit Coordinates (5trr.pdb1.gz) 924 Kb

LPC: Ligand-Protein Contacts for 5TRR

CSU: Contacts of Structural Units for 5TRR

Structure Factors (1998 Kb)

Retrieve 5TRR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5TRR from S2C, [Save to disk]

Re-refined 5trr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TRR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5trr] [5trr_A] [5trr_B] [5trr_C] [5trr_D] [5trr_E] [5trr_F] [5trr_G] [5trr_H] [5trr_I] [5trr_J] [5trr_K] [5trr_L] [5trr_M] [5trr_N] [5trr_O] [5trr_P] [5trr_Q] [5trr_R] [5trr_S] [5trr_T] [5trr_U] [5trr_V] [5trr_W] [5trr_X] [5trr_Y] [5trr_Z] [5trr_a] [5trr_b]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]