5TT7 Transferase Transferase Inhibitor date Nov 01, 2016
title Discovery Of Tak-659, An Orally Available Investigational In Spleen Tyrosine Kinase (Syk)
authors J.Yano, A.Jennings, B.Lam, I.D.Hoffman
compound source
Molecule: Tyrosine-Protein Kinase Syk
Chain: A
Fragment: Unp Residues 356-635
Synonym: Spleen Tyrosine Kinase,P72-Syk
Ec: 2.7.10.2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Syk
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.815 85.204 88.912 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand 7KF enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of TAK-659 an orally available investigational inhibitor of Spleen Tyrosine Kinase (SYK)., Lam B, Arikawa Y, Cramlett J, Dong Q, de Jong R, Feher V, Grimshaw CE, Farrell PJ, Hoffman ID, Jennings A, Jones B, Matuszkiewicz J, Miura J, Miyake H, Natala SR, Shi L, Takahashi M, Taylor E, Wyrick C, Yano J, Zalevsky J, Nie Z, Bioorg Med Chem Lett. 2016 Dec 15;26(24):5947-5950. doi:, 10.1016/j.bmcl.2016.10.087. Epub 2016 Nov 2. PMID:27839918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5tt7.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 5TT7
  • CSU: Contacts of Structural Units for 5TT7
  • Structure Factors (814 Kb)
  • Retrieve 5TT7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TT7 from S2C, [Save to disk]
  • Re-refined 5tt7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TT7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tt7_A] [5tt7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TT7: [TyrKc ] by SMART
    • Other resources with information on 5TT7
  • Community annotation for 5TT7 at PDBWiki (http://pdbwiki.org)

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