5TU7 Protein Binding date Nov 05, 2016
title Crystal Structure Of Staphylococcus Epidermidis Aap G511-Spa (Consensus G5-Spacer-Consensus G5)
authors C.L.Shelton, D.G.Conrady, A.B.Herr
compound source
Molecule: Accumulation-Associated Protein Aap G511-Spacer-G (Consensus G5-Spacer-Consensus G5);
Chain: A, B
Engineered: Yes
 Organism_scientific: Staphylococcus Epidermidis (Strain Atc Rp62a);
Organism_taxid: 176279
Strain: Atcc 35984 Rp62a
Atcc: 35984
Gene: Aap, Serp2398
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr(De3)
symmetry Space Group: P 21 21 2
R_factor 0.256 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.200 55.100 185.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.34 Å
Primary referenceFunctional consequences of B-repeat sequence variation in the Staphylococcal biofilm protein Aap: Deciphering the assembly code., Shelton CL, Conrady DG, Herr AB, Biochem J. 2016 Nov 21. pii: BCJ20160675. PMID:27872164
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5tu7.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5tu7.pdb2.gz) 19 Kb
  • CSU: Contacts of Structural Units for 5TU7
  • Structure Factors (107 Kb)
  • Retrieve 5TU7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TU7 from S2C, [Save to disk]
  • Re-refined 5tu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TU7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TU7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tu7] [5tu7_B] [5tu7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TU7
  • Community annotation for 5TU7 at PDBWiki (http://pdbwiki.org)

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