5TVA	Ligase	date	Nov 08, 2016
title	A. Aeolicus Biow With Amp And Coa
authors	P.Estrada, M.Manandhar, S.H.Dong, J.Deveryshetty, V.Agarwal, J.E S.K.Nair
compound		source
Molecule: 6-Carboxyhexanoate--Coa Ligase Chain: A, B Synonym: Pimeloyl-Coa Synthase, Biow Ec: 6.2.1.14 Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Gene: Biow, Aq_1659 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.660 68.860 156.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	AMP, COA	enzyme	Ligase E.C.6.2.1.14 BRENDA
Gene	AQ
Gene Ontology	Chain Function Process Component A, B
Primary reference	The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes., Estrada P, Manandhar M, Dong SH, Deveryshetty J, Agarwal V, Cronan JE, Nair SK, Nat Chem Biol. 2017 Apr 17. doi: 10.1038/nchembio.2359. PMID:28414711

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (5tva.pdb1.gz) 43 Kb Biological Unit Coordinates (5tva.pdb2.gz) 41 Kb LPC: Ligand-Protein Contacts for 5TVA CSU: Contacts of Structural Units for 5TVA Structure Factors (235 Kb) Retrieve 5TVA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TVA from S2C, [Save to disk] Re-refined 5tva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TVA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TVA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tva_B] [5tva] [5tva_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TVA

Community annotation for 5TVA at PDBWiki (http://pdbwiki.org)

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