5TVN Crystal structure of the LSD-bound 5-HT2B receptor date
authors Wacker, D., Wang, S., McCorvy, J.D., Betz, R.M., Venkatakrishnan, A.J., Levit, A., Lansu, K., Schools, Z.L., Che, T., Nichols, D.E., Shoichet, B.K., Dror, R.O., Roth, B.L.
compound source
symmetry
R_factor
R_Free 0.2628
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 7LD, CLR, OLC, PEG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of an LSD-Bound Human Serotonin Receptor., Wacker D, Wang S, McCorvy JD, Betz RM, Venkatakrishnan AJ, Levit A, Lansu K, Schools ZL, Che T, Nichols DE, Shoichet BK, Dror RO, Roth BL, Cell. 2017 Jan 26;168(3):377-389.e12. doi: 10.1016/j.cell.2016.12.033. PMID:28129538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5tvn.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5TVN
  • CSU: Contacts of Structural Units for 5TVN
  • Structure Factors (332 Kb)
  • Retrieve 5TVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TVN from S2C, [Save to disk]
  • Re-refined 5tvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TVN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tvn] [5tvn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TVN
  • Community annotation for 5TVN at PDBWiki (http://pdbwiki.org)

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