5TX4 Transferase Cytokine date Nov 15, 2016
title Derivative Of Mouse Tgf-Beta2, With A Deletion Of Residues 5 K25r, R26k, L51r, A74k, C77s, L89v, I92v, K94r T95k, I98v S Amino Acid Substitutions, Bound To Human Tgf-Beta Type II R Ectodomain Residues 15-130
authors A.P.Hinck, S.Kim
compound source
Molecule: Tgf-Beta Receptor Type-2
Chain: A
Fragment: Unp Residues 38-153
Synonym: Tgfr-2,Tgf-Beta Type II Receptor,Transforming Grow Beta Receptor Type II,Tbetar-II;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transforming Growth Factor Beta-2
Chain: B
Fragment: Unp Residues 303-414
Synonym: Tgf-Beta-2,Bsc-1 Cell Growth Inhibitor,Cetermin, Glioblastoma-Derived T-Cell Suppressor Factor,G-Tsf,Polyerg
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.019 70.772 77.116 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand
enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceAn Engineered TGF-beta Monomer that Functions as a Dominant Negative to Block TGF-beta Signaling., Kim SK, Barron L, Hinck CS, Petrunak EM, Cano KE, Thangirala A, Iskra B, Brothers M, Vonberg M, Leal B, Richter B, Kodali R, Taylor AB, Du S, Barnes CO, Sulea T, Calero G, Hart PJ, Hart MJ, Demeler B, Hinck AP, J Biol Chem. 2017 Feb 22. pii: jbc.M116.768754. doi: 10.1074/jbc.M116.768754. PMID:28228478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5tx4.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (5tx4.pdb2.gz) 31 Kb
  • CSU: Contacts of Structural Units for 5TX4
  • Structure Factors (168 Kb)
  • Retrieve 5TX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TX4 from S2C, [Save to disk]
  • Re-refined 5tx4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TX4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tx4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tx4_A] [5tx4] [5tx4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TX4
  • Community annotation for 5TX4 at PDBWiki (http://pdbwiki.org)

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