5TXF Transferase date Nov 16, 2016
title Crystal Structure Of Lecithin:Cholesterol Acyltransferase (L Closed Conformation
authors K.A.Manthei, A.Glukhova, J.J.G.Tesmer
compound source
Molecule: Phosphatidylcholine-Sterol Acyltransferase
Chain: A, B, C, D
Synonym: Lecithin-Cholesterol Acyltransferase,Phospholipid- Cholesterol Acyltransferase;
Ec: 2.3.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lcat
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.250 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.887 123.532 114.778 90.00 96.19 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand BMA, NAG enzyme Transferase E.C.2.3.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA retractable lid in lecithin:cholesterol acyltransferase provides a structural mechanism for activation by apolipoprotein A-I., Manthei KA, Ahn J, Glukhova A, Yuan W, Larkin C, Manett TD, Chang L, Shayman JA, Axley MJ, Schwendeman A, Tesmer JJG, J Biol Chem. 2017 Oct 13. pii: jbc.M117.802736. doi: 10.1074/jbc.M117.802736. PMID:29030428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (521 Kb) [Save to disk]
  • Biological Unit Coordinates (5txf.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (5txf.pdb2.gz) 131 Kb
  • Biological Unit Coordinates (5txf.pdb3.gz) 132 Kb
  • Biological Unit Coordinates (5txf.pdb4.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 5TXF
  • CSU: Contacts of Structural Units for 5TXF
  • Structure Factors (1395 Kb)
  • Retrieve 5TXF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXF from S2C, [Save to disk]
  • View 5TXF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TXF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txf_B] [5txf_D] [5txf_A] [5txf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TXF
  • Community annotation for 5TXF at PDBWiki (http://pdbwiki.org)

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