5TXH De Novo Protein date Nov 16, 2016
title Polymorphic Form 2 Of Amyloid-Beta Derived Peptide - Ifaedv
authors S.Sangwan, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Ifaedv
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: Synthesized
symmetry Space Group: P 21 21 21
R_factor 0.124 R_Free 0.138
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.520 9.542 43.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand IPA enzyme
Primary referenceDistal amyloid beta-protein fragments template amyloid assembly., Do TD, Sangwan S, de Almeida NEC, Ilitchev AI, Giammona M, Sawaya MR, Buratto SK, Eisenberg DS, Bowers MT, Protein Sci. 2018 Jul;27(7):1181-1190. doi: 10.1002/pro.3375. Epub 2018 Feb 16. PMID:29349888
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (5txh.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 5TXH
  • CSU: Contacts of Structural Units for 5TXH
  • Structure Factors (80 Kb)
  • Retrieve 5TXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXH from S2C, [Save to disk]
    • View 5TXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TXH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txh_D] [5txh_B] [5txh_A] [5txh_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TXH
  • Community annotation for 5TXH at PDBWiki (http://pdbwiki.org)

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