5TXK Hydrolase date Nov 17, 2016
title Crystal Structure Of Usp35 C450s In Complex With Ubiquitin
authors G.Bader, A.Weiss-Puxbaum, A.Zoephel
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 35,Ubiquiti Carboxyl-Terminal Hydrolase 35;
Chain: A
Fragment: Unp Residues 432-603,Unp Residues 754-944
Synonym: Deubiquitinating Enzyme 35,Ubiquitin Thioesterase Ubiquitin-Specific-Processing Protease 35,Deubiquitinating Ubiquitin Thioesterase 35,Ubiquitin-Specific-Processing Pro
Ec: 3.4.19.12,3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp35, Kiaa1372, Usp34
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Polyubiquitin-B
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.160 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.235 104.235 106.381 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand EDO, SO4, ZN enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExpansion of DUB functionality by alternative isoforms: USP35, a case study., Leznicki P, Natarajan J, Bader G, Spevak W, Schlattl A, Rehman SAA, Pathak D, Weidlich S, Zoephel A, Bordone MC, Barbosa-Morais NL, Boehmelt G, Kulathu Y, J Cell Sci. 2018 Apr 23. pii: jcs.212753. doi: 10.1242/jcs.212753. PMID:29685892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5txk.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 5TXK
  • CSU: Contacts of Structural Units for 5TXK
  • Structure Factors (1409 Kb)
  • Retrieve 5TXK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXK from S2C, [Save to disk]
  • View 5TXK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TXK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txk_B] [5txk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TXK
  • Community annotation for 5TXK at PDBWiki (http://pdbwiki.org)

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