5TXV Hydrolase date Nov 17, 2016
title Hslu P21 Cell With 4 Hexamers
authors R.A.Grant, J.Chen, S.E.Glynn, R.T.Sauer
compound source
Molecule: Atp-Dependent Protease Atpase Subunit Hslu
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Synonym: Heat Shock Protein Hslu,Unfoldase Hslu
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Hslu, Htpi, B3931, Jw3902
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.274 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.497 420.860 176.418 90.00 98.56 90.00
method X-Ray Diffractionresolution 7.09 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceCovalently Linked HslU Hexamers Support a Probabilistic Mechanism that Links ATP Hydrolysis to Protein Unfolding and Translocation., Baytshtok V, Chen J, Glynn SE, Nager AR, Grant RA, Baker TA, Sauer RT, J Biol Chem. 2017 Feb 21. pii: jbc.M116.768978. doi: 10.1074/jbc.M116.768978. PMID:28223361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2895 Kb) [Save to disk]
  • Biological Unit Coordinates (5txv.pdb1.gz) 738 Kb
  • Biological Unit Coordinates (5txv.pdb2.gz) 744 Kb
  • Biological Unit Coordinates (5txv.pdb3.gz) 726 Kb
  • Biological Unit Coordinates (5txv.pdb4.gz) 713 Kb
  • LPC: Ligand-Protein Contacts for 5TXV
  • CSU: Contacts of Structural Units for 5TXV
  • Structure Factors (254 Kb)
  • Retrieve 5TXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXV from S2C, [Save to disk]
  • Re-refined 5txv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TXV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5txv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txv_W] [5txv_E] [5txv_V] [5txv_P] [5txv_R] [5txv_G] [5txv_L] [5txv_H] [5txv_T] [5txv_S] [5txv_I] [5txv_A] [5txv_F] [5txv_N] [5txv_M] [5txv_D] [5txv_K] [5txv_X] [5txv_B] [5txv_J] [5txv] [5txv_Q] [5txv_U] [5txv_O] [5txv_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TXV
  • Community annotation for 5TXV at PDBWiki (http://pdbwiki.org)

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