5TY4 Transferase date Nov 18, 2016
title Microed Structure Of A Complex Between Monomeric Tgf-B And I Receptor, Tbrii, At 2.9 A Resolution
authors S.C.Weiss, M.J.De La Cruz, J.Hattne, D.Shi, F.E.Reyes, G.Callero,
compound source
Molecule: Tgf-Beta Receptor Type-2
Chain: A
Synonym: Tgfr-2, Tgf-Beta Type II Receptor, Transforming Gr Factor-Beta Receptor Type II, Tbetar-II;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mmtgf-B2-7m
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.292 R_Free 0.328
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.530 71.330 79.508 90.00 90.00 90.00
method Electron Crystallographyresolution 2.90 Å
ligand
enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceAtomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED., de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T, Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178. PMID:28192420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (5ty4.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 5TY4
  • Structure Factors (982 Kb)
  • Retrieve 5TY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TY4 from S2C, [Save to disk]
  • Re-refined 5ty4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TY4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ty4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ty4] [5ty4_A] [5ty4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TY4
  • Community annotation for 5TY4 at PDBWiki (http://pdbwiki.org)

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