5TYF	Transferase Dna	date	Nov 19, 2016
title	Dna Polymerase Mu Product Complex, 10 Mm Mg2+ (270 Min)
authors	J.A.Jamsen, S.H.Wilson
compound		source
Molecule: Dna-Directed Dnarna Polymerase Mu Chain: A Fragment: Unp Residues 132-494 Synonym: Pol Mu,Terminal Transferase Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polm, Polmu Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgexm
Molecule: Dna (5'-D(Cpgpgpcpaptpapcpg)-3') Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
Molecule: Dna (5'-D(Cpgptpapt)-3') Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
Molecule: Dna (5'-D(Pgpcpcpg)-3') Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
symmetry	Space Group: P 21 21 21	R_factor 0.174 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.994 68.482 110.702 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.97 Å
ligand	DTT, EDO, EPE, GOA, MG, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Time-lapse crystallography snapshots of a double-strand break repair polymerase in action., Jamsen JA, Beard WA, Pedersen LC, Shock DD, Moon AF, Krahn JM, Bebenek K, Kunkel TA, Wilson SH, Nat Commun. 2017 Aug 15;8(1):253. doi: 10.1038/s41467-017-00271-7. PMID:28811466

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (5tyf.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 5TYF CSU: Contacts of Structural Units for 5TYF Structure Factors (828 Kb) Retrieve 5TYF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TYF from S2C, [Save to disk]

View 5TYF in 3D

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Visual 3D analysis of 5TYF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tyf_A] [5tyf_D] [5tyf_T] [5tyf_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5TYF at PDBWiki (http://pdbwiki.org)

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