5TZ2 Crystal structure of human CD47 ECD bound to Fab of C47B222 date
authors Cardoso, R.M.F.
compound source
symmetry
R_factor
R_Free 0.2553
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GOL, NAG enzyme
Primary referenceAnti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies., Pietsch EC, Dong J, Cardoso R, Zhang X, Chin D, Hawkins R, Dinh T, Zhou M, Strake B, Feng PH, Rocca M, Santos CD, Shan X, Danet-Desnoyers G, Shi F, Kaiser E, Millar HJ, Fenton S, Swanson R, Nemeth JA, Attar RM, Blood Cancer J. 2017 Feb 24;7(2):e536. doi: 10.1038/bcj.2017.7. PMID:28234345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (5tz2.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 5TZ2
  • CSU: Contacts of Structural Units for 5TZ2
  • Structure Factors (670 Kb)
  • Retrieve 5TZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TZ2 from S2C, [Save to disk]
  • Re-refined 5tz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TZ2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tz2 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tz2] [5tz2_H] [5tz2_L] [5tz2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TZ2
  • Community annotation for 5TZ2 at PDBWiki (http://pdbwiki.org)

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