5TZ2	Immune System	date	Nov 21, 2016
title	Crystal Structure Of Human Cd47 Ecd Bound To Fab Of C47b222
authors	R.M.F.Cardoso
compound		source
Molecule: C47b222 Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: C47b222 Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Leukocyte Surface Antigen Cd47 Chain: C Fragment: Extracellular Domain, Unp Residues 19-141 Synonym: Antigenic Surface Determinant Protein Oa3,Integrin Associated Protein,Iap,Protein Mer6; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd47, Mer6 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293(Gnti-)
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.567 72.934 72.698 90.00 108.97 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GOL, NAG	enzyme
Primary reference	Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies., Pietsch EC, Dong J, Cardoso R, Zhang X, Chin D, Hawkins R, Dinh T, Zhou M, Strake B, Feng PH, Rocca M, Santos CD, Shan X, Danet-Desnoyers G, Shi F, Kaiser E, Millar HJ, Fenton S, Swanson R, Nemeth JA, Attar RM, Blood Cancer J. 2017 Feb 24;7(2):e536. doi: 10.1038/bcj.2017.7. PMID:28234345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (5tz2.pdb1.gz) 171 Kb LPC: Ligand-Protein Contacts for 5TZ2 CSU: Contacts of Structural Units for 5TZ2 Structure Factors (670 Kb) Retrieve 5TZ2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TZ2 from S2C, [Save to disk] Re-refined 5tz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TZ2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TZ2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tz2] [5tz2_H] [5tz2_L] [5tz2_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TZ2

Community annotation for 5TZ2 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---