5TZY Fatty Acid Binding Protein Hydrolase date Nov 22, 2016
title Gpr40 In Complex With Agopam Ap8 And Partial Agonist Mk-8666
authors J.Lu, N.Byrne, S.Patel, S.Sharma, S.M.Soisson
compound source
Molecule: Free Fatty Acid Receptor 1,Endolysin,Free Fatty A Receptor 1;
Chain: A
Synonym: G-Protein Coupled Receptor 40,Lysis Protein,Lysozy Muramidase;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Ffar1, Gpr40
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.269 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.880 63.950 90.960 90.00 90.52 90.00
method X-Ray Diffractionresolution 3.22 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (5tzy.pdb1.gz) 130 Kb
  • CSU: Contacts of Structural Units for 5TZY
  • Structure Factors (312 Kb)
  • Retrieve 5TZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TZY from S2C, [Save to disk]
  • Re-refined 5tzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TZY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tzy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tzy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TZY
  • Community annotation for 5TZY at PDBWiki (http://pdbwiki.org)

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