5U0A Immune System date Nov 23, 2016
title Crispr Rna-Guided Surveillance Complex
authors Y.Xiao, M.Luo, R.P.Hayes, J.Kim, S.Ng, F.Ding, M.Liao, A.Ke
compound source
Molecule: Crispr-Associated Protein, Cse3 Family
Chain: A
Engineered: Yes
Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1588
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crispr-Associated Protein, Cse1 Family
Chain: C
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1592
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crispr-Associated Protein, Cse4 Family
Chain: D, E, F, G, H, I
Synonym: Cas7
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1590
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Cse2
Chain: J, L
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1591
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Crrna
Chain: K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermobifida Fusca Yx
Organism_taxid: 269800
Other_details: Rna Was Prepared By In Vitro Transcription

Molecule: Target Strand
Chain: M
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermobifida Fusca Yx
Organism_taxid: 269800

Molecule: Crispr-Associated Protein, Cas5e Family
Chain: N
Engineered: Yes

Organism_scientific: Thermobifida Fusca (Strain Yx)
Organism_taxid: 269800
Strain: Yx
Gene: Tfu_1589
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Nontarget Strand
Chain: O
Engineered: Yes

Synthetic: Yes
Organism_scientific: Thermobifida Fusca Yx
Organism_taxid: 269800
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
J, L


N


Primary referenceStructure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System., Xiao Y, Luo M, Hayes RP, Kim J, Ng S, Ding F, Liao M, Ke A, Cell. 2017 Jun 29;170(1):48-60.e11. doi: 10.1016/j.cell.2017.06.012. PMID:28666122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (526 Kb) [Save to disk]
  • Biological Unit Coordinates (5u0a.pdb1.gz) 518 Kb
  • CSU: Contacts of Structural Units for 5U0A
  • Retrieve 5U0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U0A from S2C, [Save to disk]
  • View 5U0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U0A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u0a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u0a_K] [5u0a_M] [5u0a_E] [5u0a_C] [5u0a_D] [5u0a_L] [5u0a_F] [5u0a_G] [5u0a_A] [5u0a_H] [5u0a_I] [5u0a_J] [5u0a_O] [5u0a_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U0A
  • Community annotation for 5U0A at PDBWiki (http://pdbwiki.org)

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