5U5S Transcription date Dec 07, 2016
title Solution Structures Of Brd2 Second Bromodomain In Complex Wi Peptide
authors L.Zeng, M.M.Zhou
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A
Fragment: Unp Residues 344-455
Synonym: O27.1.1,Really Interesting New Gene 3 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd2, Kiaa9001, Ring3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Stat3 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ALY enzyme
Primary referenceDistinct Roles of Brd2 and Brd4 in Potentiating the Transcriptional Program for Th17 Cell Differentiation., Cheung KL, Zhang F, Jaganathan A, Sharma R, Zhang Q, Konuma T, Shen T, Lee JY, Ren C, Chen CH, Lu G, Olson MR, Zhang W, Kaplan MH, Littman DR, Walsh MJ, Xiong H, Zeng L, Zhou MM, Mol Cell. 2017 Mar 16;65(6):1068-1080.e5. doi: 10.1016/j.molcel.2016.12.022. Epub, 2017 Mar 3. PMID:28262505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (689 Kb) [Save to disk]
  • Biological Unit Coordinates (5u5s.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 5U5S
  • CSU: Contacts of Structural Units for 5U5S
  • Original NMR restraints for 5U5S from PDB
  • Retrieve 5U5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U5S from S2C, [Save to disk]
  • View 5U5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U5S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u5s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u5s_A] [5u5s] [5u5s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U5S
  • Community annotation for 5U5S at PDBWiki (http://pdbwiki.org)

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