5U6O Transport Protein date Dec 08, 2016
title Structure Of The Human Hcn1 Hyperpolarization-Activated Cycl Nucleotide-Gated Ion Channel
authors C.H.Lee, R.Mackinnon
compound source
Molecule: Potassiumsodium Hyperpolarization-Activated Cycl Nucleotide-Gated Channel 1;
Chain: A, B, C, D
Fragment: Unp Residues 1-635,866-890
Synonym: Brain Cyclic Nucleotide-Gated Channel 1, Bcng-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcn1, Bcng1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of the Human HCN1 Hyperpolarization-Activated Channel., Lee CH, MacKinnon R, Cell. 2017 Jan 12;168(1-2):111-120.e11. doi: 10.1016/j.cell.2016.12.023. Epub, 2017 Jan 12. PMID:28086084
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (5u6o.pdb1.gz) 291 Kb
  • CSU: Contacts of Structural Units for 5U6O
  • Retrieve 5U6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U6O from S2C, [Save to disk]
    • View 5U6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U6O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u6o_D] [5u6o] [5u6o_B] [5u6o_C] [5u6o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U6O
  • Community annotation for 5U6O at PDBWiki (http://pdbwiki.org)

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