5U77 Lipid Transport date Dec 11, 2016
title Crystal Structure Of Orp8 Ph Domain
authors R.Ghai, H.Yang
compound source
Molecule: Oxysterol-Binding Protein-Related Protein 8
Chain: A
Fragment: Unp Residues 149-265
Synonym: Osbp-Related Protein 8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Osbpl8, Kiaa1451, Orp8, Osbp10
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Gold(De3)Plyss
symmetry Space Group: P 65 2 2
R_factor 0.227 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.079 57.079 154.949 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.16 Å
Primary referenceORP5 and ORP8 bind phosphatidylinositol-4, 5-biphosphate (PtdIns(4,5)P 2) and regulate its level at the plasma membrane., Ghai R, Du X, Wang H, Dong J, Ferguson C, Brown AJ, Parton RG, Wu JW, Yang H, Nat Commun. 2017 Oct 2;8(1):757. doi: 10.1038/s41467-017-00861-5. PMID:28970484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (5u77.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 5U77
  • Structure Factors (209 Kb)
  • Retrieve 5U77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U77 from S2C, [Save to disk]
  • View 5U77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U77
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u77 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u77_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U77
  • Community annotation for 5U77 at PDBWiki (http://pdbwiki.org)

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