5U7Z Hydrolase date Dec 13, 2016
title Human Acid Ceramidase (Asah1, Acdase) Self-Activated
authors A.Gebai, A.Gorelik, K.Illes, B.Nagar
compound source
Molecule: Acid Ceramidase
Chain: A, C
Fragment: Unp Residues 22-140
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Acid Ceramidase
Chain: B, D
Fragment: Unp Residues 141-395
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.667 68.312 97.805 90.00 120.72 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceStructural basis for the activation of acid ceramidase., Gebai A, Gorelik A, Li Z, Illes K, Nagar B, Nat Commun. 2018 Apr 24;9(1):1621. doi: 10.1038/s41467-018-03844-2. PMID:29692406
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (5u7z.pdb1.gz) 369 Kb
  • Biological Unit Coordinates (5u7z.pdb2.gz) 186 Kb
  • Biological Unit Coordinates (5u7z.pdb3.gz) 186 Kb
  • CSU: Contacts of Structural Units for 5U7Z
  • Structure Factors (255 Kb)
  • Retrieve 5U7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U7Z from S2C, [Save to disk]
  • View 5U7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u7z_B] [5u7z_C] [5u7z_D] [5u7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U7Z
  • Community annotation for 5U7Z at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science