5U8G	Transferase,Lyase Dna	date	Dec 14, 2016
title	Dna Polymerase Beta Crystallized In Peg 400
authors	B.E.Eckenroth, S.Doublie
compound		source
Molecule: Dna Polymerase Beta Chain: A Fragment: Dna Polymerase Ec: 2.7.7.7,4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Dna (5'-D(Cpcpgpapcpapgpcpgpcpaptpcp 3'); Chain: T Engineered: Yes Other_details: Dna Template Strand		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Dna Primer Strand, 10mer
Molecule: Dna (5'-D(Gpcptpgpaptpgpcpgpc)-3') Chain: P Engineered: Yes Other_details: Dna Primer Strand		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Dna Downstream Strand, 5mer
Molecule: Dna (5'-D(Gptpcpgpg)-3') Chain: D Engineered: Yes Other_details: Dna Downstream Strand		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.179 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.104 78.659 54.721 90.00 104.25 90.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	CL, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta., Eckenroth BE, Towle-Weicksel JB, Nemec AA, Murphy DL, Sweasy JB, Doublie S, Biochemistry. 2017 Apr 21. doi: 10.1021/acs.biochem.6b01287. PMID:28402631

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (5u8g.pdb1.gz) 132 Kb LPC: Ligand-Protein Contacts for 5U8G CSU: Contacts of Structural Units for 5U8G Structure Factors (1191 Kb) Retrieve 5U8G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U8G from S2C, [Save to disk] Re-refined 5u8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5U8G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5U8G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u8g_D] [5u8g_A] [5u8g_P] [5u8g] [5u8g_T] SWISS-PROT database: Domain organization of by SWISSPFAM

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