5U8T Replication date Dec 15, 2016
title Structure Of Eukaryotic Cmg Helicase At A Replication Fork A Implications
authors B.Li, R.Georgescu, Z.Yuan, R.Santos, J.Sun, D.Zhang, O.Yurieva, H.L M.E.O'Donnell
compound source
Molecule: Dna Replication Licensing Factor Mcm2
Chain: 2
Synonym: Minichromosome Maintenance Protein 2
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm2, Ybl023c, Ybl0438
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm3
Chain: 3
Synonym: Minichromosome Maintenance Protein 3
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm3, Yel032w, Sygp-Orf23
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm4
Chain: 4
Synonym: Cell Division Control Protein 54
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm4, Cdc54, Hcd21, Ypr019w, Yp9531.13
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Minichromosome Maintenance Protein 5
Chain: 5
Synonym: Cell Division Control Protein 46
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm5, Cdc46, Ylr274w, L9328.1
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm6
Chain: 6
Synonym: Minichromosome Maintenance Protein 6
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm6, Ygl201c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm7
Chain: 7
Synonym: Cell Division Control Protein 47,Minichromosome Ma Protein 7;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm7, Cdc47, Ybr202w, Ybr1441
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Psf1
Chain: A
Synonym: Partner Of Sld Five 1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Psf1, Ydr013w, Pza208, Yd8119.18
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Psf2
Chain: B
Synonym: Partner Of Sld Five 2
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Psf2, Yjl072c, Hrf213, J1086
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Psf3
Chain: C
Synonym: Partner Of Sld Five 3
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Psf3, Yol146w
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Complex Gins Protein Sld5
Chain: D
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Sld5, Ydr489w
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Cell Division Control Protein 45
Chain: E
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Cdc45, Sld4, Ylr103c, L8004.11
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna (5'-D(Ptptptptptptptptptptptptpt
Chain: F
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.90 Å
ligand ANP enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
2


3
  • chromatin silencing at telom...

  • 4


    5


    6


    7
  • chromatin silencing at telom...

  • A


    B
  • 3'-5' DNA helicase activity


  • C


    D
  • 3'-5' DNA helicase activity


  • E


    Primary referenceStructure of eukaryotic CMG helicase at a replication fork and implications to replisome architecture and origin initiation., Georgescu R, Yuan Z, Bai L, de Luna Almeida Santos R, Sun J, Zhang D, Yurieva O, Li H, O'Donnell ME, Proc Natl Acad Sci U S A. 2017 Jan 17. pii: 201620500. doi:, 10.1073/pnas.1620500114. PMID:28096349
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (850 Kb) [Save to disk]
  • Biological Unit Coordinates (5u8t.pdb1.gz) 834 Kb
  • LPC: Ligand-Protein Contacts for 5U8T
  • CSU: Contacts of Structural Units for 5U8T
  • Retrieve 5U8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U8T from S2C, [Save to disk]
  • View 5U8T in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U8T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u8t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u8t_4] [5u8t_5] [5u8t_7] [5u8t_2] [5u8t_3] [5u8t_D] [5u8t_B] [5u8t_E] [5u8t_C] [5u8t] [5u8t_6] [5u8t_F] [5u8t_A]
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  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U8T
  • Community annotation for 5U8T at PDBWiki (http://pdbwiki.org)

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