5U9J Signaling Protein date Dec 16, 2016
title Crystal Structure Of The Fkbp Domain Of Human Aryl Hydrocarb Receptor-Interacting Protein-Like 1 (Aipl1) Complexed With Geranyl Pyrophoshate
authors R.P.Yadav, L.Gakhar, Y.Liping, N.O.Artemyev
compound source
Molecule: Aryl Hydrocarbon Receptor-Interacting Protein-Lik (Aipl1);
Chain: A, B
Fragment: Unp Residues 2-161
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aipl1, Aipl2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.294
length a length b length c angle alpha angle beta angle gamma
69.340 51.170 106.970 90.00 93.09 90.00
method X-Ray Diffractionresolution 2.10 Å
A, B

Primary referenceUnique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness., Yadav RP, Gakhar L, Yu L, Artemyev NO, Proc Natl Acad Sci U S A. 2017 Jul 24. pii: 201704782. doi:, 10.1073/pnas.1704782114. PMID:28739921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5u9j.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5u9j.pdb2.gz) 51 Kb
  • CSU: Contacts of Structural Units for 5U9J
  • Structure Factors (879 Kb)
  • Retrieve 5U9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U9J from S2C, [Save to disk]
  • Re-refined 5u9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5U9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5U9J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5u9j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u9j_A] [5u9j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5U9J
  • Community annotation for 5U9J at PDBWiki (http://pdbwiki.org)

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