5UAH Transferase Transferase Inhibitor date Dec 19, 2016
title Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob D Mutant
authors V.Molodtsov, N.T.Scharf, M.A.Stefan, G.A.Garcia, K.S.Murakami
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B, G, H
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C, I
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpob, Gron, Nitb, Rif, Ron, Stl, Stv, Tabd, B3987, Jw
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D, J
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E, K
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: F, L
Synonym: Sigma-70
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpod, Alt, B3067, Jw3039
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.814 206.668 310.286 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.10 Å
ligand MG, RFP, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, H, G


C, I


F, L
  • bacterial sigma factor activ...


  • J, D


    K, E


    Primary referenceStructural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis., Molodtsov V, Scharf NT, Stefan MA, Garcia GA, Murakami KS, Mol Microbiol. 2016 Dec 23. doi: 10.1111/mmi.13606. PMID:28009073
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2381 Kb) [Save to disk]
  • Biological Unit Coordinates (5uah.pdb1.gz) 1192 Kb
  • Biological Unit Coordinates (5uah.pdb2.gz) 1185 Kb
  • LPC: Ligand-Protein Contacts for 5UAH
  • CSU: Contacts of Structural Units for 5UAH
  • Structure Factors (2416 Kb)
  • Retrieve 5UAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UAH from S2C, [Save to disk]
  • Re-refined 5uah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UAH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uah_F] [5uah_C] [5uah] [5uah_H] [5uah_G] [5uah_E] [5uah_I] [5uah_K] [5uah_J] [5uah_A] [5uah_D] [5uah_L] [5uah_B]
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  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UAH
  • Community annotation for 5UAH at PDBWiki (http://pdbwiki.org)

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