5UAL Transferase Transferase Inhibitor date Dec 19, 2016
title Escherichia Coli Rna Polymerase And Rifampin Complex, Rpob S Mutant
authors V.Molodtsov, N.T.Scharf, M.A.Stefan, G.A.Garcia, K.S.Murakami
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B, G, H
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C, I
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpob, Gron, Nitb, Rif, Ron, Stl, Stv, Tabd, B3987, Jw
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D, J
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E, K
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpoz, B3649, Jw3624
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: F, L
Synonym: Sigma-70
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Rpod, Alt, B3067, Jw3039
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.372 205.950 309.692 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.89 Å
ligand MG, RFP, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, H, G


C, I


F, L


J, D


K, E


Primary referenceStructural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis., Molodtsov V, Scharf NT, Stefan MA, Garcia GA, Murakami KS, Mol Microbiol. 2016 Dec 23. doi: 10.1111/mmi.13606. PMID:28009073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2427 Kb) [Save to disk]
  • Biological Unit Coordinates (5ual.pdb1.gz) 1214 Kb
  • Biological Unit Coordinates (5ual.pdb2.gz) 1209 Kb
  • LPC: Ligand-Protein Contacts for 5UAL
  • CSU: Contacts of Structural Units for 5UAL
  • Structure Factors (2455 Kb)
  • Retrieve 5UAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UAL from S2C, [Save to disk]
  • Re-refined 5ual structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 5UAL
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ual from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ual_D] [5ual_B] [5ual_G] [5ual_I] [5ual_L] [5ual_C] [5ual_E] [5ual_J] [5ual_K] [5ual_A] [5ual] [5ual_H] [5ual_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UAL
  • Community annotation for 5UAL at PDBWiki (http://pdbwiki.org)

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