5UC7 Transferase date Dec 21, 2016
title Crystal Structure Of Bioa 7,8-Diaminopelargonic Acid Aminotransferase Dapa Synthase From Citrobacter Rodentium Complex
authors P.J.Stogios, E.Evdokimova, R.Di Leo, A.Savchenko, W.F.Anderson, C Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Adenosylmethionine-8-Amino-7-Oxononanoate Aminotr
Chain: A
Synonym: 7,8-Diamino-Pelargonic Acid Aminotransferase,8- Diaminononanoate Synthase,Diaminopelargonic Acid Synthase;
Ec: 2.6.1.62
Engineered: Yes
 Organism_scientific: Citrobacter Rodentium
Organism_taxid: 97825
Strain: Icc168
Gene: Bioa, Rod_07751
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg53
symmetry Space Group: P 21 21 2
R_factor 0.152 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.369 88.306 63.274 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand LLP, TAR enzyme Transferase E.C.2.6.1.62 BRENDA
Gene ROD
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (5uc7.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 5UC7
  • CSU: Contacts of Structural Units for 5UC7
  • Structure Factors (342 Kb)
  • Retrieve 5UC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UC7 from S2C, [Save to disk]
  • Re-refined 5uc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UC7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uc7_A] [5uc7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UC7
  • Community annotation for 5UC7 at PDBWiki (http://pdbwiki.org)

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