5UC9 Oxidoreductase date Dec 22, 2016
title Crystal Structure Of Human Heme Oxygenase-2 In Complex With
authors S.Luo, L.Tong
compound source
Molecule: Heme Oxygenase 2
Chain: A, B, C, D
Fragment: Residues 1-213
Synonym: Ho-2
Ec: 1.14.14.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmox2, Ho2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.751 82.900 137.051 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MYR enzyme Oxidoreductase E.C.1.14.14.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHeme Oxygenase 2 Binds Myristate to Regulate Retrovirus Assembly and TLR4 Signaling., Zhu Y, Luo S, Sabo Y, Wang C, Tong L, Goff SP, Cell Host Microbe. 2017 Feb 8;21(2):220-230. doi: 10.1016/j.chom.2017.01.002., Epub 2017 Jan 26. PMID:28132836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (5uc9.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (5uc9.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (5uc9.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (5uc9.pdb4.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5UC9
  • CSU: Contacts of Structural Units for 5UC9
  • Structure Factors (1740 Kb)
  • Retrieve 5UC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UC9 from S2C, [Save to disk]
  • Re-refined 5uc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UC9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uc9_A] [5uc9_B] [5uc9] [5uc9_C] [5uc9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UC9
  • Community annotation for 5UC9 at PDBWiki (http://pdbwiki.org)

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