5UDJ Rna Binding Protein date Dec 27, 2016
title Ifit1 Monomeric Mutant (L457el464e) With Gppp-Aaaa
authors Y.M.Abbas, S.Martinez-Montero, M.J.Damha, B.Nagar
compound source
Molecule: Interferon-Induced Protein With Tetratricopeptide 1;
Chain: A
Synonym: Ifit-1,Interferon-Induced 56 Kda Protein,P56
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifit1, G10p1, Ifi56, Ifnai1, Isg56
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-D((G3a))-R(Papapa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: P 42 2 2
R_factor 0.159 R_Free 0.181
length a length b length c angle alpha angle beta angle gamma
112.536 112.536 93.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand CA, G3A, PGE enzyme
  • intracellular transport of v...

  • Primary referenceStructure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations., Abbas YM, Laudenbach BT, Martinez-Montero S, Cencic R, Habjan M, Pichlmair A, Damha MJ, Pelletier J, Nagar B, Proc Natl Acad Sci U S A. 2017 Mar 1. pii: 201612444. doi:, 10.1073/pnas.1612444114. PMID:28251928
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5udj.pdb1.gz) 248 Kb
  • Biological Unit Coordinates (5udj.pdb2.gz) 985 Kb
  • LPC: Ligand-Protein Contacts for 5UDJ
  • CSU: Contacts of Structural Units for 5UDJ
  • Structure Factors (2179 Kb)
  • Retrieve 5UDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UDJ from S2C, [Save to disk]
  • Re-refined 5udj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UDJ in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UDJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5udj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5udj] [5udj_B] [5udj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UDJ
  • Community annotation for 5UDJ at PDBWiki (http://pdbwiki.org)

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