5UDK Rna Binding Protein date Dec 27, 2016
title Ifit1 Monomeric Mutant (L457el464e) With Ppp-Aaaa
authors Y.M.Abbas, S.Martinez-Montero, M.J.Damha, B.Nagar
compound source
Molecule: Interferon-Induced Protein With Tetratricopeptide 1;
Chain: A
Synonym: Ifit-1,Interferon-Induced 56 Kda Protein,P56
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifit1, G10p1, Ifi56, Ifnai1, Isg56
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-D((Atp))-R(Papapa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: P 42 2 2
R_factor 0.164 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.432 112.432 93.172 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ATP, CA, EDO, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • intracellular transport of v...

  • Primary referenceStructure of human IFIT1 with capped RNA reveals adaptable mRNA binding and mechanisms for sensing N1 and N2 ribose 2'-O methylations., Abbas YM, Laudenbach BT, Martinez-Montero S, Cencic R, Habjan M, Pichlmair A, Damha MJ, Pelletier J, Nagar B, Proc Natl Acad Sci U S A. 2017 Mar 1. pii: 201612444. doi:, 10.1073/pnas.1612444114. PMID:28251928
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (5udk.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 5UDK
  • CSU: Contacts of Structural Units for 5UDK
  • Structure Factors (2267 Kb)
  • Retrieve 5UDK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UDK from S2C, [Save to disk]
  • Re-refined 5udk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UDK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UDK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5udk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5udk] [5udk_B] [5udk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UDK
  • Community annotation for 5UDK at PDBWiki (http://pdbwiki.org)

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