5UFP	Transcription	date	Jan 05, 2017
title	Crystal Structure Of Pt2399 Bound To Hif2a-B:Arnt-B Comple
authors	X.Du
compound		source
Molecule: Endothelial Pas Domain-Containing Protein 1 Chain: A Fragment: Unp Residues 239-348 Synonym: Epas-1,Basic-Helix-Loop-Helix-Pas Protein Mop2,Cla Helix-Loop-Helix Protein 73,Bhlhe73,Hif-1-Alpha-Like Factor Hypoxia-Inducible Factor 2-Alpha,Hif2-Alpha,Member Of Pas P Pas Domain-Containing Protein 2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Epas1, Bhlhe73, Hif2a, Mop2, Pasd2 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator Chain: B Fragment: Unp Residues 342-453 Synonym: Arnt Protein,Class E Basic Helix-Loop-Helix Protei Bhlhe2,Dioxin Receptor,Nuclear Translocator,Hypoxia-Inducib 1-Beta,Hif1-Beta; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arnt, Bhlhe2 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
symmetry	Space Group: C 1 2 1	R_factor 0.218 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.379 84.057 41.472 90.00 106.48 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	86D	enzyme
note	5UFP supersedes 5T0T
Primary reference	On-Target Efficacy of a HIF2alpha Antagonist in Preclinical Kidney Cancer Models., Cho H, Du X, Rizzi JP, Liberzon E, Chakraborty AA, Gao W, Carvo I, Signoretti S, Bruick R, Josey JA, Wallace EM, Kaelin WG Jr, Nature. 2016 Sep 5. doi: 10.1038/nature19795. PMID:27595393

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (5ufp.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 5UFP CSU: Contacts of Structural Units for 5UFP Structure Factors (522 Kb) Retrieve 5UFP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UFP from S2C, [Save to disk] Re-refined 5ufp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UFP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UFP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ufp_A] [5ufp_B] [5ufp] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5UFP

Community annotation for 5UFP at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---