5UG9	Transferase Transferase Inhibitor	date	Jan 07, 2017
title	Crystal Structure Of The Egfr Kinase Domain (L858r, T790m, V Complex With A Covalent Inhibitor N-[(3r,4r)-4-Fluoro-1-{6- Methoxy-1-Methyl-1h-Pyrazol-4-Yl)Amino]-9-(Propan-2-Yl)-9h- Yl}Pyrrolidin-3-Yl]Propanamide
authors	K.S.Gajiwala, R.A.Ferre
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Unp Residues 695-1022 Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb, Erbb1, Her1 Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014 Expression_system_taxid: 1491790
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.959 69.894 113.019 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.33 Å
ligand	8AM, EDO, GOL, SO4	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of N-((3R,4R)-4-fluoro-1-(6-((3-methoxy-1-methyl-1H-pyrazol-4-yl)amino)-9-methyl-9H- purin-2-yl)pyrrolidine-3-yl)acrylamide (PF-06747775) Through Structure-Based Drug Design; A High Affinity Irreversible Inhibitor Targeting Oncogenic EGFR Mutants With Selectivity Over Wild-Type EGFR., Planken S, Behenna DC, Nair SK, Johnson TO, Nagata A, Almaden C, Bailey S, Ballard TE, Bernier L, Cheng H, Cho-Schultz S, Dalvie D, Deal JG, Dinh DM, Edwards MP, Ferre RA, Gajiwala KS, Hemkens MD, Kania RS, Kath JC, Matthews J, Murray BW, Niessen S, Orr ST, Pairish M, Sach NW, Shen H, Shi M, Solowiej J, Tran K, Tseng E, Vicini P, Wang Y, Weinrich SL, Zhou R, Zientek M, Liu L, Luo Y, Xin S, Zhang C, Lafontaine JA, J Med Chem. 2017 Mar 13. doi: 10.1021/acs.jmedchem.6b01894. PMID:28287730

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (5ug9.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 5UG9 CSU: Contacts of Structural Units for 5UG9 Structure Factors (445 Kb) Retrieve 5UG9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UG9 from S2C, [Save to disk] Re-refined 5ug9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ug9] [5ug9_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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