5UGF Transferase Transferase Inhibitor date Jan 08, 2017
title Crystal Structure Of Human Purine Nucleoside Phosphorylase ( Mutant Complexed With Dadme-Immg And Phosphate
authors R.K.Harijan, S.A.Cameron, J.B.Bonanno, S.C.Almo, V.L.Schramm
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A, B, C, D, E, F
Synonym: Pnp, Inosine Phosphorylase, Inosine-Guanosine Phos
Ec: 2.4.2.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pnp, Np
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.960 124.270 136.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand IM5, PO4 enzyme Transferase E.C.2.4.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]
  • Biological Unit Coordinates (5ugf.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (5ugf.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 5UGF
  • CSU: Contacts of Structural Units for 5UGF
  • Structure Factors (2665 Kb)
  • Retrieve 5UGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UGF from S2C, [Save to disk]
  • Re-refined 5ugf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UGF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ugf_F] [5ugf_E] [5ugf_A] [5ugf_D] [5ugf_B] [5ugf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UGF
  • Community annotation for 5UGF at PDBWiki (http://pdbwiki.org)

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