5UHM Signaling Protein date Jan 11, 2017
title Apo-Structure Of Mature Growth Differentiation Factor 11
authors E.Goebel, T.Thompson
compound source
Molecule: Growthdifferentiation Factor 11
Chain: A, B
Synonym: Gdf-11,Bone Morphogenetic Protein 11,Bmp-11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gdf11, Bmp11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.217 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.160 65.160 101.942 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for potency differences between GDF8 and GDF11., Walker RG, Czepnik M, Goebel EJ, McCoy JC, Vujic A, Cho M, Oh J, Aykul S, Walton KL, Schang G, Bernard DJ, Hinck AP, Harrison CA, Martinez-Hackert E, Wagers AJ, Lee RT, Thompson TB, BMC Biol. 2017 Mar 3;15(1):19. doi: 10.1186/s12915-017-0350-1. PMID:28257634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhm.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 5UHM
  • Structure Factors (841 Kb)
  • Retrieve 5UHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHM from S2C, [Save to disk]
  • Re-refined 5uhm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UHM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uhm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhm_A] [5uhm] [5uhm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UHM
  • Community annotation for 5UHM at PDBWiki (http://pdbwiki.org)

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