5UIY Transcription date Jan 16, 2017
title Structure Of Bromodomain From Human Baz1a
authors M.Oppikofer, J.Sudhamsu
compound source
Molecule: Bromodomain Adjacent To Zinc Finger Domain Protei
Chain: A, B, C, D
Fragment: Unp Residues 1425-1538
Synonym: Atp-Dependent Chromatin-Remodeling Protein,Atp-Uti Chromatin Assembly And Remodeling Factor 1,Hacf1,Chrac Subu Williams Syndrome Transcription Factor-Related Chromatin-Re Factor 180,Wcrf180,Hwalp1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baz1a, Acf1, Wcrf180, Hspc317
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.196 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.432 44.920 72.077 105.11 89.95 102.92
method X-Ray Diffractionresolution 1.69 Å
ligand EPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceNon-canonical reader modules of BAZ1A promote recovery from DNA damage., Oppikofer M, Sagolla M, Haley B, Zhang HM, Kummerfeld SK, Sudhamsu J, Flynn EM, Bai T, Zhang J, Ciferri C, Cochran AG, Nat Commun. 2017 Oct 11;8(1):862. doi: 10.1038/s41467-017-00866-0. PMID:29021563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (5uiy.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5uiy.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (5uiy.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (5uiy.pdb4.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 5UIY
  • CSU: Contacts of Structural Units for 5UIY
  • Structure Factors (1094 Kb)
  • Retrieve 5UIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UIY from S2C, [Save to disk]
  • Re-refined 5uiy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UIY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uiy_A] [5uiy_B] [5uiy_C] [5uiy_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UIY
  • Community annotation for 5UIY at PDBWiki (http://pdbwiki.org)

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