5UJZ	Viral Protein Immune System	date	Jan 19, 2017
title	Cryoem Structure Of An Influenza Virus Receptor-Binding Site Antigen Interface - Class 1
authors	Y.Liu, J.Pan, T.Caradonna, S.Jenni, D.D.Raymond, A.G.Schmidt, S.C. N.Grigorieff
compound		source
Molecule: Hemagglutinin Ha1 Chain: A, C, E Fragment: Unp Residues 18-339 Engineered: Yes		Organism_scientific: Influenza A Virus (Asolomon Islands32006(H1n1)); Organism_taxid: 464623 Strain: Asolomon Islands32006(H1n1) Gene: Ha Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: Hi-5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Hemagglutinin Ha2 Chain: B, D, F Fragment: Unp Residues 344-516 Engineered: Yes		Organism_scientific: Influenza A Virus Organism_taxid: 464623 Strain: Asolomon Islands32006(H1n1) Gene: Ha Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: Hi-5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Scfv Chain: G, H, I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.80 Å
ligand	BMA, NAG	enzyme
Gene Ontology	Chain Function Process Component A, C, E F, D, B
Primary reference	CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface., Liu Y, Pan J, Jenni S, Raymond DD, Caradonna T, Do KT, Schmidt AG, Harrison SC, Grigorieff N, J Mol Biol. 2017 Jun 16;429(12):1829-1839. doi: 10.1016/j.jmb.2017.05.011. Epub, 2017 May 12. PMID:28506635

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk] Biological Unit Coordinates (5ujz.pdb1.gz) 590 Kb LPC: Ligand-Protein Contacts for 5UJZ CSU: Contacts of Structural Units for 5UJZ Retrieve 5UJZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UJZ from S2C, [Save to disk]

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Visual 3D analysis of 5UJZ

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ujz_G] [5ujz_C] [5ujz_A] [5ujz_I] [5ujz_F] [5ujz_D] [5ujz_H] [5ujz_B] [5ujz_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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