5UK7 Dna Binding Protein Dna date Jan 20, 2017
title Escherichia Coli Hfq Bound To Dsdna
authors J.Orans, A.R.Kovach, R.G.Brennan
compound source
Molecule: Rna-Binding Protein Hfq
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 2-69
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Hfq, A6i92_23385, Awg90_11910, Hmpref3040_03060
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Pcpgpgpcpapapapapapapcpgpgpcpapapapapa
Chain: N, Z
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (5'- D(Ptptptptptptpgpcpcpgptptptptptptpgpcpc
Chain: M, Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor 0.211 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.749 65.795 81.996 105.93 92.28 119.92
method X-Ray Diffractionresolution 3.00 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5uk7.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (5uk7.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5UK7
  • CSU: Contacts of Structural Units for 5UK7
  • Structure Factors (463 Kb)
  • Retrieve 5UK7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UK7 from S2C, [Save to disk]
  • View 5UK7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UK7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uk7_Y] [5uk7_B] [5uk7_L] [5uk7_K] [5uk7_M] [5uk7_G] [5uk7_F] [5uk7_J] [5uk7_H] [5uk7_C] [5uk7_N] [5uk7_Z] [5uk7_D] [5uk7_I] [5uk7_A] [5uk7_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UK7
  • Community annotation for 5UK7 at PDBWiki (http://pdbwiki.org)

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