5UKK Transferase Transferase Inhibitor date Jan 23, 2017
title Human Grk2 In Complex With Human G-Beta-Gamma Subunits And C (14ak)
authors M.C.Cato, K.T.Homan, J.J.G.Tesmer
compound source
Molecule: Beta-Adrenergic Receptor Kinase 1
Chain: A
Synonym: Beta-Ark-1, G-Protein Coupled Receptor Kinase 2
Ec: 2.7.11.15
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grk2, Adrbk1, Bark, Bark1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacdual

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: G
Synonym: G Gamma-I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacdual
symmetry Space Group: P 1 2 1
R_factor 0.221 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.123 62.423 102.035 90.00 92.81 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 8DJ, MG enzyme Transferase E.C.2.7.11.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • G-protein coupled acetylchol...

  • B
  • G-protein coupled acetylchol...

  • G


    Primary referenceStructure-Based Design of Highly Selective and Potent G Protein-Coupled Receptor Kinase 2 Inhibitors Based on Paroxetine., Waldschmidt HV, Homan KT, Cato MC, Cruz-Rodriguez O, Cannavo A, Wilson MW, Song J, Cheung JY, Koch WJ, Tesmer JJ, Larsen SD, J Med Chem. 2017 Mar 29. doi: 10.1021/acs.jmedchem.7b00112. PMID:28323425
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (5ukk.pdb1.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 5UKK
  • CSU: Contacts of Structural Units for 5UKK
  • Structure Factors (1196 Kb)
  • Retrieve 5UKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UKK from S2C, [Save to disk]
  • Re-refined 5ukk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UKK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ukk] [5ukk_B] [5ukk_A] [5ukk_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UKK
  • Community annotation for 5UKK at PDBWiki (http://pdbwiki.org)

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