5ULW Thansferase Dna date Jan 25, 2017
title Structure Of Human Dna Polymerase Iota Bound To Template 1-M Deoxyadenosine
authors R.Jain, A.K.Aggarwal
compound source
Molecule: Dna (5'-D(Apgpgpapcpcp(Doc))-3')
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644

Molecule: Dna (5'-D(Tp(Ma7)Pgpgpgptpcpcpt)-3')
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644

Molecule: Dna Polymerase Iota
Chain: A
Synonym: Eta2,Rad30 Homolog B
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.204 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.918 97.918 202.473 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.62 Å
ligand CL, DOC, MA7, MG, TTP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of error-free DNA synthesis across N1-methyl-deoxyadenosine by human DNA polymerase-iota., Jain R, Choudhury JR, Buku A, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Sci Rep. 2017 Mar 8;7:43904. doi: 10.1038/srep43904. PMID:28272441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5ulw.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5ULW
  • CSU: Contacts of Structural Units for 5ULW
  • Structure Factors (169 Kb)
  • Retrieve 5ULW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ULW from S2C, [Save to disk]
  • Re-refined 5ulw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ULW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ULW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ulw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ulw_T] [5ulw_P] [5ulw] [5ulw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ULW
  • Community annotation for 5ULW at PDBWiki (http://pdbwiki.org)

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