5ULX Thansferase Dna date Jan 25, 2017
title Structure Of Human Dna Polymerase Iota Bound To Template 1-M Deoxyadenosine Crystallized In The Presence Of Dctp
authors R.Jain, A.K.Aggarwal
compound source
Molecule: Dna (5'-D(Apgpgpapcpcp(Doc))-3')
Chain: P
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644

Molecule: Dna (5'-D(P(Ma7)Pgpgpgptpcpcpt)-3')
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644

Molecule: Dna Polymerase Iota
Chain: A
Synonym: Eta2,Rad30 Homolog B
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.216 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.915 97.915 202.239 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.96 Å
ligand CL, DOC, MA7 enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of error-free DNA synthesis across N1-methyl-deoxyadenosine by human DNA polymerase-iota., Jain R, Choudhury JR, Buku A, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Sci Rep. 2017 Mar 8;7:43904. doi: 10.1038/srep43904. PMID:28272441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5ulx.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 5ULX
  • CSU: Contacts of Structural Units for 5ULX
  • Structure Factors (586 Kb)
  • Retrieve 5ULX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ULX from S2C, [Save to disk]
  • Re-refined 5ulx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ULX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ULX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ulx_A] [5ulx] [5ulx_T] [5ulx_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ULX
  • Community annotation for 5ULX at PDBWiki (http://pdbwiki.org)

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