5UMO Transferase date Jan 27, 2017
title Structure Of Extracellular Signal-Regulated Kinase
authors J.Chlebowicz, F.Zhang, E.J.Goldsmith
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Mapk 1,Ert1,Extracellular Signal-Regulated Kinase Map Kinase Isoform P42,P42-Mapk,Mitogen-Activated Protein K Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mapk1, Erk2, Mapk, Prkm1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.147 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.320 72.420 61.250 90.00 109.50 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase activity
  • MAP kinase kinase activity


  • Primary referenceAtomic structure of the MAP kinase ERK2 at 2.3 A resolution., Zhang F, Strand A, Robbins D, Cobb MH, Goldsmith EJ, Nature. 1994 Feb 24;367(6465):704-11. PMID:8107865
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (5umo.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5UMO
  • CSU: Contacts of Structural Units for 5UMO
  • Structure Factors (466 Kb)
  • Retrieve 5UMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UMO from S2C, [Save to disk]
  • Re-refined 5umo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UMO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5umo] [5umo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UMO
  • Community annotation for 5UMO at PDBWiki (http://pdbwiki.org)

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