5UN5 Signaling Protein De Novo Protein date Jan 30, 2017
title Frizzled-8 Complex With Designed Surrogate Wnt Agonist, Crys
authors C.Y.Janda, K.C.Garcia
compound source
Molecule: Frizzled-8
Chain: B, A
Fragment: Unp Residues 28-150
Synonym: Hfz8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd8
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Designed Wnt Agonist B12
Chain: D, C
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.200 77.510 81.430 90.00 92.76 90.00
method X-Ray Diffractionresolution 2.99 Å
Primary referenceSurrogate Wnt agonists that phenocopy canonical Wnt and beta-catenin signalling., Janda CY, Dang LT, You C, Chang J, de Lau W, Zhong ZA, Yan KS, Marecic O, Siepe D, Li X, Moody JD, Williams BO, Clevers H, Piehler J, Baker D, Kuo CJ, Garcia KC, Nature. 2017 May 11;545(7653):234-237. doi: 10.1038/nature22306. Epub 2017 May 3. PMID:28467818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5un5.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 5UN5
  • Structure Factors (93 Kb)
  • Retrieve 5UN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UN5 from S2C, [Save to disk]
  • Re-refined 5un5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5un5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5un5_A] [5un5_B] [5un5_D] [5un5] [5un5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UN5
  • Community annotation for 5UN5 at PDBWiki (http://pdbwiki.org)

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