5UN6 Signaling Protein De Novo Protein date Jan 30, 2017
title Frizzled-8 Complex With Designed Surrogate Wnt Agonist, A1 D
authors C.Y.Janda, K.C.Garcia, K.M.Jude
compound source
Molecule: Frizzled-8
Chain: A, B, C, D
Fragment: Unp Residues 28-150
Synonym: Hfz8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd8
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Designed Wnt Agonist B12
Chain: E, F, G, H
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 2 1
R_factor 0.200 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.420 36.450 125.530 90.00 93.73 90.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceSurrogate Wnt agonists that phenocopy canonical Wnt and beta-catenin signalling., Janda CY, Dang LT, You C, Chang J, de Lau W, Zhong ZA, Yan KS, Marecic O, Siepe D, Li X, Moody JD, Williams BO, Clevers H, Piehler J, Baker D, Kuo CJ, Garcia KC, Nature. 2017 May 11;545(7653):234-237. doi: 10.1038/nature22306. Epub 2017 May 3. PMID:28467818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5un6.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (5un6.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (5un6.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (5un6.pdb4.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5UN6
  • Structure Factors (172 Kb)
  • Retrieve 5UN6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UN6 from S2C, [Save to disk]
  • Re-refined 5un6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UN6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UN6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5un6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5un6_E] [5un6_D] [5un6_G] [5un6_H] [5un6_F] [5un6] [5un6_B] [5un6_A] [5un6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UN6
  • Community annotation for 5UN6 at PDBWiki (http://pdbwiki.org)

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