5UNJ Nuclear Protein date Jan 31, 2017
title Structure Of Human Liver Receptor Homolog 1 In Complex With Rjw100
authors S.G.Mays, E.A.Ortlund
compound source
Molecule: Nuclear Receptor Subfamily 5 Group A Member 2
Chain: A
Fragment: Unp Residues 299-541
Synonym: Alpha-1-Fetoprotein Transcription Factor,B1-Bindin Hb1f,Cyp7a Promoter-Binding Factor,Hepatocytic Transcriptio Liver Receptor Homolog 1,Lrh-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr5a2, B1f, Cpf, Ftf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peroxisome Proliferator-Activated Gamma Coactivat Alpha;
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.199 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.180 84.027 45.355 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand RJW enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and Dynamics of the Liver Receptor Homolog 1-PGC1alpha Complex., Mays SG, Okafor CD, Tuntland ML, Whitby RJ, Dharmarajan V, Stec J, Griffin PR, Ortlund EA, Mol Pharmacol. 2017 Mar 31. pii: mol.117.108514. doi: 10.1124/mol.117.108514. PMID:28363985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5unj.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5UNJ
  • CSU: Contacts of Structural Units for 5UNJ
  • Structure Factors (118 Kb)
  • Retrieve 5UNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UNJ from S2C, [Save to disk]
  • Re-refined 5unj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UNJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5unj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5unj] [5unj_A] [5unj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UNJ
  • Community annotation for 5UNJ at PDBWiki (http://pdbwiki.org)

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